• views: 428
• date: 19 June 2022
• posted by: voska89

conda software package management
installing Anaconda
install software with conda
create separate conda environments
integrate conda with snakemake
control software versions with conda
learn about conda channels
Requirements
Basic Terminal/command line skills would be helpful
Description
conda is a package management system. It forms part of the basic toolkit of any programmer. It is especially useful in bioinformatics and for people who use a lot of different software and packages. It is also useful for R and Python programmers. I would recommend that you learn it at the beginning of your programmer's or bioinformatician's career. It has saved me many headaches and has vastly simplified software installation. It is also indispensable if you want to use software which have incompatible dependencies. This happens very often. For example, some software want Python 2 on your system, while others want Python 3. conda allows you to solve this kind of problems.Use conda to:- find software- find software specific to your operating system- install software- install R packages- install Python modules- install bioinformatics software from the bioconda channel- create separate software environment- delete software- remove conda environments- change conda environment- control software versions- update software versions- use incompatible software on the same computer- use the .condarc file to configure conda- use conda efficiently by adding channels to the .condarc file- write reproducible and tidy code- name your conda environments in a tidy, informative and reproducible wayFor the time being, this course does not teach how to package your own software into conda packages. You do not need this course to learn conda. However, I this course teaches you conda step by step with ample narration and explanations. As more students join, I will add more videos and improve the quality but for now all the topics above are covered.
Who this course is for
programmers,people new to programming,data scientists,biologists,bioinformaticians,people new to bioinformatics,software pipeline managers,science PhD students

Homepage

https://www.udemy.com/course/conda-package-manager

   
   
   

Forex Trading

Crypto Trading. 20 USD Bonus after KYC

We need your support!
Make a donation to help us stay online
        
Bitcoin (BTC)
bc1q08g9d22cxkawsjlf8etuek2pc9n2a3hs4cdrld
	
Bitcoin Cash (BCH)
qqvwexzhvgauxq2apgc4j0ewvcak6hh6lsnzmvtkem

Ethereum (ETH)
0xb55513D2c91A6e3c497621644ec99e206CDaf239

Litecoin (LTC)
ltc1qt6g2trfv9tjs4qj68sqc4uf0ukvc9jpnsyt59u

USDT (ERC20)
0xb55513D2c91A6e3c497621644ec99e206CDaf239

USDT (TRC20)
TYdPNrz7v1P9riWBWZ317oBgJueheGjATm

0 1 2 3 4 5

| Print version |

	Information
		Users of GUESTS are not allowed to comment this publication.